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  • If you find SEEK useful in your research, please cite the following publication:
    Targeted exploration and analysis of large cross-platform human transcriptomic compendia
    Qian Zhu, Aaron K Wong, Arjun Krishnan, Miriam R Aure, Alicja Tadych, Ran Zhang, David C Corney, Casey S Greene, Lars A Bongo, Vessela N Kristensen, Moses Charikar, Kai Li & Olga G Troyanskaya
    Nature Methods (2015), Mar;12(3):211-4, paper link, PMID: 25581801
  • Works citing or mentioning SEEK:

    Individual and combined effects of DNA methylation and copy number alterations on miRNA expression in breast tumors
    Miriam R Aure et al. Genome Biology (2013), paper link, PMID:24257477

    Principles and methods of integrative genomic analyses in cancer
    Vessela N Kristensen et al. Nature Reviews Cancer (2014), paper link, PMID: 24759209

    Genetic evidence of a precisely tuned dysregulation in the hypoxia signaling pathway during oncogenesis
    Sophie Couve et al. Cancer Research (2014), paper link, PMID: 25371412

    Cancer: smoother journeys for molecular data
    Vivien Marx. Nature Methods (2015), paper link, PMID: 25825833

    Analysis and visualisation of large scale microarray data
    P Adler. Dissertationes Biologicae Universitatis Tartuensis (2015)

    PADPIN: protein-protein interaction networks of angiogenesis, arteriogenesis, and inflammation in peripheral arterial disease
    LH Chu et al. Phisiological Genomics (2015), paper link, PMID: 26058837

    Implications of pleiotropy: challenges and opportunities for mining Big Data in biomedicine
    C Yang et al. Frontiers in genetics (2015), paper link, PMID: 26175753

    Big Data in Caenorhabditis elegans: quo vadis?
    Hutter et al. .Molecular biology of the cell (2015), paper link, PMID: 26543198

    Human transient receptor potential (TRP) channel expression profiling in carcinogenesis
    Bernardini et al. Int. J. Dev. Biol. (2015), paper link, PMID: 26679952

    The oncogenic triangle of HMGA2, LIN28B and IGF2BP1 antagonizes tumor-suppressive actions of the let-7 family
    Busch et al. Nucleic Acids Research (2016), paper link, PMID: 26917013

    Comparative evaluation of isoform-level gene expression estimation algorithms for RNA-seq and exon-array platforms
    Dapas et al. Briefings in bioinformatics (2016), paper link, PMID: 26944083

    Establishing an analytic pipeline for genome-wide DNA methylation
    Wright et al. Clinical Epigenetics (2016), paper link, PMID: 27127542

    GEMINI: a computationally-efficient search engine for large gene expression datasets
    DeFreitas et al. BMC bioinformatics (2016), paper link, PMID: 26911289

    Metabolic network rewiring of propionate flux compensates vitamin B12 deficiency in C. elegans.
    Watson et al. eLife (2016), paper link, PMID:27383050

    Genetic deletion of fibroblast growth factor 14 recapitulates phenotypic alterations underlying cognitive impairment associated with schizophrenia
    Alshammari et al. Translational Psychiatry (2016), paper link, PMID:27163207

    Parallel pairwise correlation computation on Intel Xeon Phi Clusters.
    Liu et al. arXiv.org (2016), paper link, arXiv:1605.01584